PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010929828.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C3H
Protein Properties Length: 380aa    MW: 41258.5 Da    PI: 8.8804
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010929828.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.59.6e-131842327
                    S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                    +++C+++++tGtCk+G++CkF+H++
  XP_010929828.1 18 QPECQYYLKTGTCKFGATCKFHHPK 42
                    799********************96 PP

2zf-CCCH33.85.9e-116488327
                    S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                    +++C ++ rtG+Ck+G++CkF+H++
  XP_010929828.1 64 EKECAYYIRTGQCKFGNTCKFHHPQ 88
                    679********************97 PP

3zf-CCCH39.59.3e-13224249227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++C+f+++tG Ck+G+ CkF+H++
  XP_010929828.1 224 DQPECQFYMKTGDCKFGAVCKFHHPR 249
                     689*********************96 PP

4zf-CCCH38.32.3e-12269295127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++lC f++r+G+Ck+G++CkF H++
  XP_010929828.1 269 PGEPLCVFYSRYGICKFGPNCKFDHPM 295
                     589**********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003566.3E-61542IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.3381543IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-101842IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-61944IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.0E-52141IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-46188IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.03E-76189IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.9536189IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-86488IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-46787IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.53222250IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-5222249IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-9224249IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-6225252IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-5228250IPR000571Zinc finger, CCCH-type
SMARTSM003569.9E-8268295IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.953268296IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-9270295IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-6271296IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-4273293IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MAIAAARIKG GYPERVGQPE CQYYLKTGTC KFGATCKFHH PKDKAGIAGR VQLNILGYPL  60
RPNEKECAYY IRTGQCKFGN TCKFHHPQPS NAMVALRGSP VYPPVHSSTT PGQQSYPGGL  120
TNWSLSRTSF IPSPRWQDPS SYTQLILPQG LVQVPGWNPY PGQMGSSSPD SQQQTPGAAQ  180
YYSTTHQSET SAGAQGTFSS YRPGSIPMGV YALQRENIFP ERPDQPECQF YMKTGDCKFG  240
AVCKFHHPRE RLVPVPNCLL SPLGLPLRPG EPLCVFYSRY GICKFGPNCK FDHPMGTFTY  300
GISTSSTADV PTVRRLIGSS SGPPALTSSS EGPADAGMGK PRDSRRLSLS ESRQIGTGDE  360
NLEAEASHTS SSIGQVSSFP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010929828.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X4
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLW1PQQ60.0W1PQQ6_AMBTC; Uncharacterized protein
STRINGVIT_04s0023g00370.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-126zinc finger protein 1